pairwise_Gst_Nei {mmod} | R Documentation |
Calculates pairwise values of Nei's Gst
Description
This function calculates Nei's Gst, a measure of genetic differentiation, between all combinations of populaitons in a genind object.
Usage
pairwise_Gst_Nei(x, linearized = FALSE)
Arguments
x |
genind object (from package adegenet) |
linearized |
logical, if TRUE will turned linearized Gst (1/(1-Gst)) |
Value
dist A distance matrix with between-population values of Gst
References
Nei M. (1973) Analysis of gene diversity in subdivided populations. PNAS: 3321-3323.
Nei M, Chesser RK. (1983). Estimation of fixation indices and gene diversities. Annals of Human Genetics. 47: 253-259.
See Also
Other pairwise: pairwise_D
,
pairwise_Gst_Hedrick
Other Nei: Gst_Nei
Examples
data(nancycats)
pairwise_Gst_Nei(nancycats[1:26,])
[Package mmod version 1.3.3 Index]