Phi_st_Meirmans {mmod} | R Documentation |
Calculate Phi_st from a genind object
Description
This function calculates Meirmans' corrected version of Phi_st, an Fst analog produced using the AMOVA framework. Note, the global estimate produced by this function is calculated as the mean distance between individuals across all loci, and this exlcuded individuals with one or more missing value.
Usage
Phi_st_Meirmans(x)
Arguments
x |
genind object (from package adegenet) |
Value
per.locus Phi_st estimate for each locus
global Phi_st estimate across all loci
References
Meirmans, PW. (2005), Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution 60: 2399-402.
Excoffier, L., Smouse, P., Quattro, J. (1992), Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-91
See Also
Other diffstat: D_Jost
,
Gst_Hedrick
, Gst_Nei
,
diff_stats
Examples
data(nancycats)
Phi_st_Meirmans(nancycats[1:26,])