Gst_Hedrick {mmod} | R Documentation |
Calculate Nei's Gst using estimators for Hs and Ht
Description
This function calculates Hedrick's G'st from a genind object
Usage
Gst_Hedrick(x)
Arguments
x |
genind object (from package adegenet) |
Details
Takes a genind object with population information and calculates Hedrick's G”st.
Because estimators of Hs and Ht are used, it's possible to have negative estimates of G”st. You should treat such results as zeros (or an attempt to estimate a very low number with some error which might push it below zero)
Value
per.locus values for each G”st for each locus in the dataset
global estimtes for G”st based on overall heterozygosity
References
Hedrick, PW. (2005), A Standardized Genetic Differentiation Measure. Evolution 59: 1633-1638.
Meirmans PG, Hedrick PW (2011), Assessing population structure: FST and related measures. Molecular Ecology Resources, 11:5-18
See Also
Other diffstat: D_Jost
,
Gst_Nei
, Phi_st_Meirmans
,
diff_stats
Other Hedrick: pairwise_Gst_Hedrick
Examples
data(nancycats)
Gst_Hedrick(nancycats)