posthoc {mineCitrus}

Runs ANOVA and t-tests comparing clusters and markers in clusters

Description

Runs ANOVA and t-tests comparing clusters and markers in clusters

Usage

posthoc(processedDat, clustIDdif)

Arguments

processedDat

data that has been processed using the processforanova function

clustIDdif

ID number of the cluster to compare the others to

Value

A list of t-test results for each of the comparisons

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)