plotdif2 {mineCitrus} | R Documentation |
Plot dot plots of features where one cluster is significantly different from the reference cluster
Description
Plot dot plots of features where one cluster is significantly different from the reference cluster
Usage
plotdif2(BJHdf, anovadata, strat)
Arguments
BJHdf |
results of a call to findsig |
anovadata |
results of call to processforanova |
strat |
clusterIDs for clusters that are stratifying |
Value
Dot plots for all features where one cluster is significantly different from the reference cluster
Examples
library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
citrus.foldClustering=citrus.foldClustering,
citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)
sig<-findSig(posHocRes=ttests)
graphs<-plotdif2(BJHdf=sig,anovadata=foranova,strat=19999)
[Package mineCitrus version 1.0.0 Index]