plotdif {mineCitrus}

Plot dot plots of features where both clusters are significantly different from the reference cluster

Description

Plot dot plots of features where both clusters are significantly different from the reference cluster

Usage

plotdif(BJHdf, anovadata, strat)

Arguments

BJHdf

results of a call to findsig

anovadata

results of call to processforanova

strat

clusterIDs for clusters that are stratifying

Value

Dot plots for all features where both clusters are significantly different from the reference cluster

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)
sig<-findSig(posHocRes=ttests)
graphs<-plotdif(BJHdf=sig,anovadata=foranova,strat=19999)