difMarkerPlots {mineCitrus} | R Documentation |
Plot dot plots of features where both clusters are significantly different from the reference cluster without processing data before hand
Description
Plot dot plots of features where both clusters are significantly different from the reference cluster without processing data before hand
Usage
difMarkerPlots(data, clusters, markers, diffclust, strat)
Arguments
data |
output from call to allmeds function |
clusters |
clusterIDs of the desired clusters to compare and plot |
markers |
indices of the columns of the data matrix for features to be analyse |
diffclust |
clusterID of for cluster to statisticaly compare others to |
strat |
clusterIDs for stratifying clusters as indicated by Citrus results |
Value
Dot plots for all features where both clusters are significantly different from the reference cluster
Examples
library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
citrus.foldClustering=citrus.foldClustering,
citrus.foldFeatureSet=citrus.foldFeatureSet)
graphs<-difMarkerPlots(data=meds,clusters=c(19999,19972,19988),
markers=c(2,3),diffclust=19999,strat=19999)
[Package mineCitrus version 1.0.0 Index]