allmeds {mineCitrus} | R Documentation |
Gets matrices of medians for each individual sample for all measured parameters for all clusters
Description
Gets matrices of medians for each individual sample for all measured parameters for all clusters
Usage
allmeds(citrus.combinedFCSSet, citrus.foldClustering, citrus.foldFeatureSet)
Arguments
citrus.combinedFCSSet |
loaded from citrusClustering.RData file generated by Citrus run |
citrus.foldClustering |
loaded from citrusClustering.RData file generated by Citrus run |
citrus.foldFeatureSet |
computed from first two variables using citrus.calculateFoldFeatureSet function from citrus package |
Value
Returns a list with each element corresponding to a matrix (rows as samples, columns as measured parameters) for a different cluster (for the minimum threshold specified)
Examples
library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
citrus.foldClustering=citrus.foldClustering,
citrus.foldFeatureSet=citrus.foldFeatureSet)
[Package mineCitrus version 1.0.0 Index]