plot_score_biomarker {miRetrieve} | R Documentation |
Plot frequency of biomarker scores in abstracts
Description
Plot frequency of biomarker scores in abstracts.
Usage
plot_score_biomarker(
df,
keywords = biomarker_keywords,
case = FALSE,
bins = NULL,
colour = "steelblue3",
col.abstract = Abstract,
col.pmid = PMID,
title = NULL
)
Arguments
df |
Data frame containing abstracts. |
keywords |
Character vector. Vector containing keywords. The biomarker
score is calculated based on these keywords. How much weight a keyword
in |
case |
Boolean. If |
bins |
Integer. Specifies how many bins are used to plot
the distribution. If |
colour |
String. Colour of histogram. |
col.abstract |
Symbol. Column containing abstracts. |
col.pmid |
Symbol. Column containing PubMed-IDs. |
title |
String. Plot title. |
Details
Plots a frequency distribution of biomarker scores in abstracts of a
data frame. The biomarker score is influenced by the choice of
terms in keywords
.
Plotting the distribution can help deciding if the
terms are well-chosen, or in choosing the right threshold to decide
which abstracts are considered to contain use of miRNAs as biomarker.
Value
Histogram displaying the distribution of biomarker scores in abstracts.
See Also
Other score functions:
assign_topic()
,
calculate_score_animals()
,
calculate_score_biomarker()
,
calculate_score_patients()
,
calculate_score_topic()
,
plot_score_animals()
,
plot_score_patients()
,
plot_score_topic()