get_mhc_1_haplotypes {mhcnuggetsr}

Get all the MHC-I haplotypes

Description

Get all the MHC-I haplotypes that MHCnuggets has been trained upon.

Usage

get_mhc_1_haplotypes(
  folder_name = get_default_mhcnuggets_folder(),
  mhcnuggets_url = get_mhcnuggets_url()
)

Arguments

folder_name

superfolder of MHCnuggets. The name of the superfolder is /home/[user_name]/.local/share by default, as can be obtained byget_default_mhcnuggets_folder

mhcnuggets_url

URL to the MHCnuggets GitHub repository

Value

a character vector with haplotype names in MHCnuggets format

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_mhcnuggets_installed()) {
  get_mhc_1_haplotypes()
}