default_params_doc {mhcnuggetsr} | R Documentation |
This function does nothing. It is intended to inherit the documentation of the parameters from.
Description
This function does nothing. It is intended to inherit the documentation of the parameters from.
Usage
default_params_doc(
ba_models,
folder_name,
mhc,
mhcs,
mhc_class,
mhcnuggets_options,
mhcnuggets_url,
n_aas,
peptide,
peptides,
peptide_length,
peptides_path,
protein_sequence,
verbose
)
Arguments
ba_models |
Set to TRUE to use a pure BA model |
folder_name |
superfolder of MHCnuggets.
The name of the superfolder is |
mhc |
the MHC haplotype name |
mhcs |
the MHC haplotype names |
mhc_class |
MHC class. Must be |
mhcnuggets_options |
options to run MHCnuggets with, as can be created by create_mhcnuggets_options. |
mhcnuggets_url |
URL to the MHCnuggets GitHub repository |
n_aas |
number of amino acids |
peptide |
one peptide sequence |
peptides |
one of more peptide sequences |
peptide_length |
length of a peptide, in number of amino acids |
peptides_path |
the path to the peptides |
protein_sequence |
protein sequence, in uppercase,
for example |
verbose |
set to TRUE for more debug information |
Note
This is an internal function, so it should be marked with
@noRd
. This is not done, as this will disallow all
functions to find the documentation parameters
Author(s)
Richèl J.C. Bilderbeek