| demo_methylkit_met_all {metevalue} | R Documentation |
Methyrate output dataset from methylKit
Description
The methyrate dataset samples "myCpG" data from the methylKit (a bioconductor package) for illustrating purpose.
Details
The data includes 7 columns:
- chr: Chromosome
- start: The positions of the start sites of the corresponding region
- end: The positions of the end sites of the corresponding region
- strand: Strand
- pvalue: The adjusted p-value based on BH method in MWU-test
- qvalue: cutoff for qvalue of differential methylation statistic
- methyl.diff: The difference between the group means of methylation level
Please check the vignette "metevalue" for details.
References
Akalin, Altuna, et al. "methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles." Genome biology 13.10 (2012): 1-9. doi: 10.1186/gb-2012-13-10-r87