| replicate_phyloMeta1.3 {metagear} | R Documentation |
Replicate phylogeneic meta-analysis results and summaries from phyloMeta 1.3.
Description
Replicate phylogenetic meta-analysis results and summaries from Lajeunesse (2011) software 'phyloMeta' 1.3. Currently does not fully replicate all functionality.
Usage
replicate_phyloMeta1.3(model, weights, data, phylogenyFile)
Arguments
model |
A two-sided linear formula object describing the model, with the response (effect sizes) on the left of a ~ operator and the moderator variables, separated by +, :, * operators, on the right. NOTE: phyloMeta was limited to analyses with a single moderator variable. This function currently supports only numerical categorical moderators. |
weights |
A vector of effect size variances that will be used as weights for the meta-analysis. |
data |
A data frame containing the variables named in model and weights and species names (names must be exact as specified in phylogeny). |
phylogenyFile |
A text file containing a NEWICK phylogeny. The number of species must be same as (k) number of effect sizes in data. |
References
Lajeunesse, M.J. (2011) phyloMeta: a program for phylogenetic comparative analyses with meta-analysis. Bioinformatics 27, 2603-2604.