n_subtaxa_1 {metacoder} | R Documentation |
Get number of subtaxa
Description
Get number of subtaxa for each taxon in an object of type [taxonomy()] or [taxmap()], not including subtaxa of subtaxa etc. This does not include subtaxa assigned to subtaxa.
obj$n_subtaxa_1() n_subtaxa_1(obj)
Arguments
obj |
([taxonomy()] or [taxmap()]) |
Value
numeric
See Also
Other taxonomy data functions:
classifications()
,
id_classifications()
,
is_branch()
,
is_internode()
,
is_leaf()
,
is_root()
,
is_stem()
,
map_data()
,
map_data_()
,
n_leaves()
,
n_leaves_1()
,
n_subtaxa()
,
n_supertaxa()
,
n_supertaxa_1()
,
taxon_ids()
,
taxon_indexes()
,
taxon_names()
,
taxon_ranks()
Examples
# Count number of immediate subtaxa in each taxon
n_subtaxa_1(ex_taxmap)
# Filter taxa based on number of subtaxa
# (this command removed all leaves or "tips" of the tree)
filter_taxa(ex_taxmap, n_subtaxa_1 > 0)
[Package metacoder version 0.3.7 Index]