| hmp_otus {metacoder} | R Documentation |
A HMP subset
Description
A subset of the Human Microbiome Project abundance matrix produced by QIIME.
It contains OTU ids, taxonomic lineages, and the read counts for 50 samples.
See hmp_samples for the matching dataset of sample information.
Format
A 1,000 x 52 tibble.
Details
The 50 samples were randomly selected such that there were 10 in each of 5 treatments: "Saliva", "Throat", "Stool", "Right_Antecubital_fossa", "Anterior_nares". For each treatment, there were 5 samples from men and 5 from women.
Source
Subset from data available at https://www.hmpdacc.org/hmp/HMQCP/
See Also
Other hmp_data:
hmp_samples
[Package metacoder version 0.3.7 Index]