RegressionStatTestNA {metaGE}

Compute the pvalue of the regression test in presence of missing values.

Description

The function RegressionStatTest compute the statistic and the pvalue of the regression test.

Usage

RegressionStatTestNA(Covariate, CovName, Zmat, MatCorr, Data, Configs.list)

Arguments

Covariate

A dataset containing the values of one covariate (in columns) in each environment (in rows).

CovName

The name the covariate.

Zmat

A matrix containing the Zscores of all markers (in rows) in each environment (in columns).

MatCorr

The inter-environments correlation matrix. Can be computed using MetaGE.cor.

Data

A dataset containing the effect, the pvalues and the na configuration for all marker

Configs.list

A vector containing the NA configurations present in the dataset

Value

A dataset of two columns containing the pvalue of the meta-regression test and the number of environment used to perform the test of all markers.