read_many_biotyper_reports {maldipickr} | R Documentation |
Importing a list of Bruker MALDI Biotyper CSV reports
Description
Importing a list of Bruker MALDI Biotyper CSV reports
Usage
read_many_biotyper_reports(path_to_reports, report_ids, best_hits = TRUE, ...)
Arguments
path_to_reports |
A vector of paths to the csv files to be imported by |
report_ids |
A vector of character names for each of the reports. |
best_hits |
A logical indicating whether to return only the best hit in the |
... |
Name-value pairs to be passed on to |
Value
A tibble just like the one returned by the read_biotyper_report()
function, except that the name of the spot of the MALDI target (i.e., plate) is registered to the original_name
column (instead of the name
column), and the column name
consist in the provided report_ids
used as a prefix of the original_name
column.
Note
The report identifiers are sanitized to convert all dashes (-
) as underscores (_
).
See Also
Examples
# List of Bruker MALDI Biotyper reports
reports_paths <- system.file(
c("biotyper.csv", "biotyper.csv", "biotyper.csv"),
package = "maldipickr"
)
# Read the list of reports and combine them in a single tibble
read_many_biotyper_reports(
reports_paths,
report_ids = c("first", "second", "third"),
# Additional metadata below are passed to dplyr::mutate
growth_temperature = 37.0
)
[Package maldipickr version 1.3.0 Index]