| volcanoplot_DE_fn {lfproQC} | R Documentation |
Find out the Up and Down regulated proteins from volcano plot
Description
Volcano plot is used for visualizing the differentially expressed proteins by plotting the log fold change values in x axis and (-log10 p-values) in y axis.
This function can be used for visualizing the up regulated, down regulated, and non-significant proteins along with their information.
Usage
volcanoplot_DE_fn(top_table, x1 = NULL, x2 = NULL, p = NULL)
Arguments
top_table |
Top table information |
x1 |
Cut-off limit for down-regulated proteins |
x2 |
Cut-off limit for up-regulated proteins |
p |
Cut-off limit for p-values |
Value
'Result' Top table along with up, down, significant and non-significant protein information.
'Volcano plot' Interactive MA plot with the details of up and down regulated proteins
'Up-regulated' Up-regulated protein information
'Down-regulated' Down-regulated protein information
'Non-significant' Non-significant protein information
Examples
result <- volcanoplot_DE_fn(yeast_top_table, -1, 1, 0.05)
result$`Volcano Plot`
result$`Result`
result$`Up-regulated`
result$`Down-regulated`
result$`Non-significant`