top_table_fn {lfproQC}

Creating the top table

Description

Top table can be used for identifying the pairwise differential abundance analysis of proteins in the dataset.

Usage

top_table_fn(data, groups, ch_gr1, ch_gr2)

Arguments

data

Normalized and missing values imputed expression dataset containing protein information

groups

Group information about the input data

ch_gr1

Group number of the dataset for pairwise comparison with the another group

ch_gr2

Group number of the dataset to be compared with the chosen group

Value

Top table consists of following values

'logFC' - Log fold change values,

'AveExpr' - Average intensity values,

't'- t-statistic values,

'P.Value' - P-values,

'adj.P.Val' - Adjusted P-values,

'B'- B-statistic values

See Also

'limma::topTable'

Examples

top_table <- top_table_fn(knn_rlr_yeast_data, yeast_groups, 2, 1)
top_table