MAplot_DE_fn {lfproQC}

Find out the Up and Down regulated proteins from MA plot

Description

MA plot is used for visualizing the differentially expressed proteins by plotting the log mean intensity data in x axis and log fold change values in y axis.

This function can be used for visualizing the up regulated, down regulated, and non-significant proteins along with their information.

Usage

MAplot_DE_fn(top_table, x1 = NULL, x2 = NULL, p = NULL)

Arguments

top_table

Top table information

x1

Cut-off limit for down-regulated proteins

x2

Cut-off limit for up-regulated proteins

p

Cut-off limit for p-values

Value

'Result' Top table along with up, down, significant and non-significant protein information.

'MA plot' Interacive MA plot with the details of up and down regulated proteins

'Up-regulated' Up-regulated protein information

'Down-regulated' Down-regulated protein information

'Non-significant' Non-significant protein information

Examples

result <- MAplot_DE_fn(yeast_top_table, -1, 1, 0.05)
result$`MA Plot`
result$`Result`
result$`Up-regulated`
result$`Down-regulated`
result$`Non-significant`