example.data {lfmm} | R Documentation |
Genetic and phenotypic data for Arabidopsis thaliana
Description
A dataset containing SNP frequency and simulated phenotypic data for 170 plant accessions. The variables are as follows:
Usage
data(example.data)
Format
A list with 4 arguments: genotype, phenotype, causal.set, chrpos
Details
genotype: binary (0 or 1) SNP frequency for 170 individuals (26943 SNPs).
phenotype: simulated phenotypic data for 170 individuals.
causal.set: set of indices for causal SNPs.
chrpos: genetic map including chromosome position of each SNP.
Reference: Atwell et al (2010). Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465, 627–631.
[Package lfmm version 1.1 Index]