kronosListToTable {kronos}

Wrangle results from list of KronosOut Objects to publication ready table.

Description

These functions provides a unified wrapper to retrieve results from a list of kronosOut objects.

Usage

kronosListToTable(kronos_list, padjust = TRUE)

Arguments

kronos_list

a list of preferrably named kronosOut objects.

padjust

a boolean. Toggles FDR using Benjamini and Hochbergs procedure.

Value

A table with circadian output stats per group per feature.

Examples

#Load prepared data stored in 'kronos' library
data("kronos_demo")
output <- kronos(formula = Variable_1 ~ time(Timepoint), 
data = onevariable, period = 24, verbose = TRUE, pairwise = FALSE)

#Extracting data from the output object:
getKronos_fit(output)
getKronos_trace(output)
getKronos_groupwise(output)

#Plotting:
gg_kronos_circle(output)
gg_kronos_sinusoid(output)

#For high-dimensional data, use fw_kronos:
out_list = fw_kronos(x = bigdata[1:50,], formula = ~ Group + time(Timepoint), 
metadata = bigmeta, period = 24, verbose = FALSE, pairwise = TRUE) 

#Extracting data from the output object: 
kronosListToTable(out_list)

#Plotting:
gg_kronos_acrogram(out_list)