hmmMargLlik {krm}

Functions related to profile HMM

Description

Functions related to profile HMM

Usage

hmmMargLlik(dat, aaPrior, tau)
readPriorFromFile(priorFileName) 

Arguments

dat

a matrix representation of a multiple sequence alignment, each row is a sequence, each column is a position

aaPrior

a list of two elements, "alpha" "mix.coef", representing mixture Dirichlet prior

tau

numeric

priorFileName

string