doPSCN {jointseg} | R Documentation |
Run PSCN segmentation (defunct)
Description
The 'PSCN' package is not maintained anymore and it is not available for R >= 3.0.0. The original 'doPSCN' function has been moved to the directory 'zzz.defunct'. The skeleton of that function is kept for backward compatibility.
Usage
doPSCN(Y, alpha = 0.01, platform = c("Illumina", "Affymetrix"),
verbose = FALSE, ...)
Arguments
Y |
The signal to be segmented, a matrix containing the following columns:
|
alpha |
sensitivity level in [0,1] to be passed to
|
platform |
Specifies form which array platform 'Y' was generated: Illumina or Affymetrix |
verbose |
A |
... |
Further arguments to be passed to |
Author(s)
Morgane Pierre-Jean and Pierre Neuvial
References
Chen, H., Xing, H., & Zhang, N. R. (2011). Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays. PLoS computational biology, 7(1), e1001060.
See Also
Examples
print("The 'PSCN' package is not available for R >= 3.0.0.")
print("See http://cran.r-project.org/web/packages/PSCN/index.html")