whales {insect} | R Documentation |
Cetacean 16S rDNA sequences.
Description
A dataset containing 19 mitochondrial 16S rDNA sequences from 18 cetacean species, downloaded from GenBank on 27 March 2018.
Usage
whales
Format
A "DNAbin" list object containing 19 cetacean mitochondrial sequences
in raw-byte format,
averaging 130 nucleotides in length. The sequences are named with the GenBank
accession numbers followed by a "|" symbol, followed by their NCBI taxonomy ID
numbers.
The sequences were downloaded using the
searchGB
function on 17 June 2018
(query term: "cetacea[ORGN]+AND+16S+rRNA[GENE]"), and trimmed using the
virtualPCR
function with the primers 16Smam1 and 16Smam2
(CGGTTGGGGTGACCTCGGA and GCTGTTATCCCTAGGGTAACT, respectively; Taylor 1996).
Source
https://www.ncbi.nlm.nih.gov/genbank/
References
Taylor PG (1996) Reproducibility of ancient DNA sequences from extinct Pleistocene fauna. Molecular Biology and Evolution, 13, 283-285.