shm_event_reconstruction {immuneSIM} | R Documentation |
Decodes immuneSIM repertoire shm_events column.
Description
Decodes immuneSIM repertoire shm_events column.
Usage
shm_event_reconstruction(shm_event_vec)
Arguments
shm_event_vec |
An vector containing strings describing SHM events as output in shm_events column of immuneSIM repertoires. The string contains information on every mutation event in the form: "Position:pre_mutation_nucleotide,post_mutation_nucleotide" combined as: "Mutation1|Mutation2|Mutation3". For example: "171:t,a|186:g,a". |
Value
List of dataframes. Each entry contains location and shm mutation info for a simulated sequence
Examples
shm_events_example<-c("171:t,a|186:g,a|287:g,a|310:t,c","","294:c,g|316:t,c|330:c,t")
shm_list<-shm_event_reconstruction(shm_events_example)
[Package immuneSIM version 0.8.7 Index]