plot_report_repertoire {immuneSIM}

Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)

Description

Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)

Usage

plot_report_repertoire(repertoire, output_dir = "", verbose = TRUE)

Arguments

repertoire

An annotated AIRR-compliant immuneSIM repertoire.

(http://docs.airr-community.org/en/latest/)

output_dir

String containing full path of desired output folder. If empty figures will be output in tempdir().

verbose

Determines whether messages on plot locations are output to user. (Default: TRUE)

Value

TRUE (plots saved as pdfs into subfolder 'figures')

Examples

repertoire <- list_example_repertoires[["example_repertoire_A"]]
plot_report_repertoire(repertoire,output_dir="")