list_germline_genes_allele_01 {immuneSIM} | R Documentation |
Collection of germline genes and frequencies
Description
A list containing sublists for species ("hs","mm") which in turn contain sublists for receptors ("ig","tr") which are subset in chains ("h", "k", "l" and "b", "a", respectively). Each entry contains a list of three dataframes ("V","D" and "J") with the major IMGT annotated germline genes including name, sequence based on IMGT and frequencies based on experimental data from DeWitt(2017), Emerson (2017), Greiff (2017) and Madi (2017)
Usage
list_germline_genes_allele_01
Format
A list of lists containing dataframes with up to 126 entries:
- gene
name of germline gene
- allele
allele number (presently restricted to allele 01)
- sequence
nucleotide sequence of germline gene
- species
name of species
- frequency
Frequencies of germline genes based on experimental data
Source
http://www.imgt.org/vquest/refseqh.html
https://doi.org/10.1371/journal.pone.0160853
https://doi.org/10.1038/ng.3822
https://doi.org/10.1016/j.celrep.2017.04.054
https://doi.org/10.7554/eLife.22057