insertions_and_deletion_lengths_df {immuneSIM}

Dataframe containing insertion sequences and deletion lengths

Description

A dataframe containing all insertions and deletions observed in experimental data (pooled across all samples, Greiff, 2017) This dataframe is a subset of the dataframe used in the application note. The original dataframe which contains 11363603 rows can be downloaded from:

Usage

insertions_and_deletion_lengths_df

Format

A data frame with 500000 rows and variables:

n1

np1 insertions

n2

np2 insertions

del_v

lengths of V gene deletions

del_d_5

lengths of 5' end D gene deletions

del_d_3

lengths of 3' end D gene deletions

del_j

lengths of J gene deletions

Details

https://github.com/GreiffLab/immuneSIM or using the provided function: load_insdel_data()

Source

https://doi.org/10.1016/j.celrep.2017.04.054