codon_replacement_reconstruction {immuneSIM}

Decodes immuneSIM repertoire codon replacements events.

Description

Decodes immuneSIM repertoire codon replacements events.

Usage

codon_replacement_reconstruction(codon_replacement_vec)

Arguments

codon_replacement_vec

An vector containing strings describing codon replacement events as generated by codon_replacement() function. The string contains information on every replacement event in the form:

"initial_codon:replacement_codon:number_of_occurrences"

which is combined into: "Replacement1|Replacement2|Replacement3".

(For example: "tac,tat:3|agc,agt:1|gtg,gtt:0".)

Value

List of dataframes. Each entry contains replacement info including count of occurrences for each simulated sequence.

Examples

codon_replacement_example <- c("tat,tac:3|agt,agc:3|gtt,gtg:0", "tat,tac:1|agt,agc:1|gtt,gtg:1")
codon_replacement_list <- codon_replacement_reconstruction(codon_replacement_example)