load10x {iCellR}

Load 10X data as data.frame

Description

This function takes 10X data files barcodes.tsv, genes.tsv and matrix.mtx and converts them to proper matrix file for iCellR.

Usage

load10x(dir.10x = NULL, gene.name = 2)

Arguments

dir.10x

A directory that includes the 10X barcodes.tsv, genes.tsv and matrix.mtx files.

gene.name

Gene names or ids column number, default = 2.

Value

The data frame object

Examples

my.data <- load10x(system.file("extdata", "filtered_gene_bc_matrices", package = "iCellR"))

# See first few rows and columns
head(my.data)[1:5]