gg.cor {iCellR}

Gene-gene correlation. This function helps to visulaize and calculate gene-gene correlations.

Description

Gene-gene correlation. This function helps to visulaize and calculate gene-gene correlations.

Usage

gg.cor(
  x = NULL,
  data.type = "imputed",
  gene1 = NULL,
  gene2 = NULL,
  conds = NULL,
  clusts = NULL,
  cell.size = 1,
  cell.transparency = 0.5,
  interactive = TRUE,
  out.name = "plot"
)

Arguments

x

An object of class iCellR.

data.type

Choose from imputed and main, default = "imputed".

gene1

First gene name.

gene2

Second gene name.

conds

Filter only one condition (only one), default is all conditions.

clusts

Choose clusters to plot.

cell.size

A numeric value for the size of the cells, default = 1.

cell.transparency

A numeric value between 0 to 1, default = 0.5.

interactive

If TRUE an html interactive file will be made, default = TRUE.

out.name

Output name for html file if interactive = TRUE, default = "plot".

Value

An object of class iCellR