clust.avg.exp {iCellR}

Create a data frame of mean expression of genes per cluster

Description

This function takes an object of class iCellR and creates an average gene expression for every cluster.

Usage

clust.avg.exp(
  x = NULL,
  data.type = "main",
  conds.to.avg = NULL,
  rounding.digits = 4,
  low.cell.filt = 5,
  round.num = FALSE
)

Arguments

x

An object of class iCellR.

data.type

Choose from "main", "atac", "atac.imputed" and "imputed", default = "main"

conds.to.avg

Choose the conditions you want to average, default = NULL (all conditions).

rounding.digits

integer indicating the number of decimal places (round) or significant digits (signif) to be used.

low.cell.filt

filter out clusters with low number of cells, default = 5.

round.num

Rounding of Numbers, default = FALSE.

Value

An object of class iCellR.