cell.gating {iCellR}

Cell gating

Description

This function takes an object of class iCellR and a 2D tSNE or UMAP plot and gates around cells to get their ids.

Usage

cell.gating(x = NULL, my.plot = NULL, plot.type = "tsne")

Arguments

x

An object of class iCellR.

my.plot

The plot to use for gating. Must be a 2D plot.

plot.type

Choose from knetl, umap and tsne, default = NULL.

Value

An object of class iCellR.