cell.cycle {iCellR}

Cell cycle phase prediction

Description

This function takes an object of class iCellR and assignes cell cycle stage for the cells.

Usage

cell.cycle(
  object = NULL,
  scoring.List = NULL,
  return.stats = FALSE,
  scoring.method = "tirosh"
)

Arguments

object

A data frame containing gene counts for cells.

scoring.List

Genes that are used as a marker for phases.

return.stats

Return the data or object. If FALSE the object would be returned.

scoring.method

Choose from "coverage" or "tirosh" for scoring method.

Value

The data frame object