wambaugh2019 {httk} | R Documentation |
in vitro Toxicokinetic Data from Wambaugh et al. (2019)
Description
These data are the new HTTK in vitro data for chemicals reported in Wambaugh et al. (2019) They are the processed values used to make the figures in that manuscript. These data summarize the results of Bayesian analysis of the in vitro toxicokinetic experiments conducted by Cyprotex to characterize fraction unbound in the presence of pooled human plasma protein and the intrnsic hepatic clearance of the chemical by pooled human hepatocytes.
Usage
wambaugh2019
Format
A data frame with 496 rows and 17 variables:
- Compound
The name of the chemical
- CAS
The Chemical Abstracts Service Registry Number
- Human.Clint
Median of Bayesian credible interval for intrinsic hepatic clearance (uL/min/million hepatocytes)]
- Human.Clint.pValue
Probability that there is no clearance
- Human.Funbound.plasma
Median of Bayesian credibl interval for fraction of chemical free in the presence of plasma
- pKa_Accept
pH(s) at which hydrogen acceptor sites (if any) are at equilibrium
- pKa_Donor
pH(s) at which hydrogne donor sites (if any) are at equilibrium
- DSSTox_Substance_Id
Identifier for CompTox Chemical Dashboard
- SMILES
Simplified Molecular-Input Line-Entry System structure description
- Human.Clint.Low95
Lower 95th percentile of Bayesian credible interval for intrinsic hepatic clearance (uL/min/million hepatocytes)
- Human.Clint.High95
Uppper 95th percentile of Bayesian credible interval for intrinsic hepatic clearance (uL/min/million hepatocytes)
- Human.Clint.Point
Point estimate of intrinsic hepatic clearance (uL/min/million hepatocytes)
- Human.Funbound.plasma.Low95
Lower 95th percentile of Bayesian credible interval for fraction of chemical free in the presence of plasma
- Human.Funbound.plasma.High95
Upper 95th percentile of Bayesian credible interval for fraction of chemical free in the presence of plasma
- Human.Funbound.plasma.Point
Point estimate of the fraction of chemical free in the presence of plasma
- MW
Molecular weight (Daltons)
- logP
log base ten of octanol:water partiion coefficient
Author(s)
John Wambaugh
Source
Wambaugh et al. (2019)
References
Wambaugh et al. (2019) "Assessing Toxicokinetic Uncertainty and Variability in Risk Prioritization", Toxicological Sciences, 172(2), 235-251.