calc_total_clearance {httk} | R Documentation |
Calculate the total plasma clearance.
Description
This function calculates the total clearance rate for a one compartment model for plasma where clearance is entirely due to metablism by the liver and glomerular filtration in the kidneys, identical to clearance of three compartment steady state model.
Usage
calc_total_clearance(
chem.cas = NULL,
chem.name = NULL,
dtxsid = NULL,
parameters = NULL,
species = "Human",
suppress.messages = FALSE,
default.to.human = FALSE,
well.stirred.correction = TRUE,
restrictive.clearance = TRUE,
adjusted.Funbound.plasma = TRUE,
...
)
Arguments
chem.cas |
Either the chemical name, CAS number, or the parameters must be specified. |
chem.name |
Either the chemical name, CAS number, or the parameters must be specified. |
dtxsid |
EPA's 'DSSTox Structure ID (https://comptox.epa.gov/dashboard) the chemical must be identified by either CAS, name, or DTXSIDs |
parameters |
Chemical parameters from parameterize_steadystate function, overrides chem.name and chem.cas. |
species |
Species desired (either "Rat", "Rabbit", "Dog", "Mouse", or default "Human"). |
suppress.messages |
Whether or not the output message is suppressed. |
default.to.human |
Substitutes missing animal values with human values if true. |
well.stirred.correction |
Uses correction in calculation of hepatic clearance for well-stirred model if TRUE. This assumes clearance relative to amount unbound in whole blood instead of plasma, but converted to use with plasma concentration. |
restrictive.clearance |
Protein binding is not taken into account (set to 1) in liver clearance if FALSE. |
adjusted.Funbound.plasma |
Uses adjusted Funbound.plasma when set to TRUE. |
... |
Additional parameters passed to parameterize_steadystate if parameters is NULL. |
Value
Total Clearance |
Units of L/h/kg BW. |
Author(s)
John Wambaugh
Examples
calc_total_clearance(chem.name="Ibuprofen")