armitage_estimate_sarea {httk} | R Documentation |
Estimate well surface area
Description
Estimate geometry surface area of plastic in well plate based on well plate format suggested values from Corning. option.plastic == TRUE (default) give nonzero surface area (sarea, m^2) option.bottom == TRUE (default) includes surface area of the bottom of the well in determining sarea. Optionally include user values for working volume (v_working, m^3) and surface area.
Usage
armitage_estimate_sarea(
tcdata = NA,
this.well_number = 384,
this.cell_yield = NA,
this.v_working = NA
)
Arguments
tcdata |
A data table with well_number corresponding to plate format, optionally include v_working, sarea, option.bottom, and option.plastic |
this.well_number |
For single value, plate format default is 384, used if is.na(tcdata)==TRUE |
this.cell_yield |
For single value, optionally supply cell_yield, otherwise estimated based on well number |
this.v_working |
For single value, optionally supply working volume, otherwise estimated based on well number (m^3) |
Value
A data table composed of any input data.table tcdata with only the following columns either created or altered by this function:
Column Name | Description | Units |
well_number | number of wells on plate | |
sarea | surface area | m^2 |
cell_yield | number of cells | cells |
v_working | working (filled) volume of each well | uL |
v_total | total volume of each well | uL |
Author(s)
Greg Honda
References
Armitage JM, Arnot JA, Wania F, Mackay D (2013). “Development and evaluation of a mechanistic bioconcentration model for ionogenic organic chemicals in fish.” Environmental toxicology and chemistry, 32(1), 115–128.