species {hoardeR} | R Documentation |
Available species at NCBI
Description
This is a list of all organisms/species that are provided by NCBI and hence could end up in the Blast run. Further, it defines the default versions of
the assuemblies that will be downloaded if no further version is specified in plotHit
, getAnnotation
or getFastaFromBed
.
Format
A data frame with 348 species.
Source
As downloaded on 05.10.2016 from
ftp://ftp.ncbi.nlm.nih.gov/genomes/
Examples
data(species)
summary(species)
[Package hoardeR version 0.10 Index]