| depth_cov {hilldiv} | R Documentation |
Depth coverage assessment
Description
Coverage of the estimated Hill numbers at different orders of diversity.
Usage
depth_cov(abund, qvalue)
Arguments
abund |
A vector or a matrix/data.frame indicating the relative abundances of one or multiple samples, respectively. If a matrix/data.frame is provided, columns must refer to samples and rows to OTUs. |
qvalue |
A positive integer or decimal number (>=0), usually between 0 and 3. |
Details
Depth coverage assessment
Value
A matrix with observed diversity, estimated diversities and coverage
Author(s)
Antton Alberdi, anttonalberdi@gmail.com
References
Chao, A. & Jost, L. (2015) Estimating diversity and entropy profiles via discovery rates of new species. Methods in Ecology and Evolution, 6, 873-882.
Jost, L. (2006). Entropy and diversity. Oikos, 113, 363-375.
Hill, M. O. (1973). Diversity and evenness: a unifying notation and its consequences. Ecology, 54, 427-432.
See Also
Examples
data(bat.diet.otutable)
depth_cov(bat.diet.otutable,0)
depth_cov(bat.diet.otutable,qvalue=1)