diversities_table {hagis} | R Documentation |
Custom Print for hagis Diversities Tables
Description
Print the frequency table of diversities from a hagis.diversities
object
The resulting object is a pander table (a text object for Markdown) for
ease of use in reporting and viewing in the console.
Usage
diversities_table(x, ...)
Arguments
x |
a |
... |
other arguments passed to |
Value
A pander object of diversities
See Also
calculate_diversities()
, individual_pathotypes()
Examples
# Using the built-in data set, P_sojae_survey
data(P_sojae_survey)
P_sojae_survey
# calculate susceptibilities with a 60 % cutoff value
diversities <- calculate_diversities(x = P_sojae_survey,
cutoff = 60,
control = "susceptible",
sample = "Isolate",
gene = "Rps",
perc_susc = "perc.susc")
# print the diversities table
diversities_table(diversities)
[Package hagis version 3.1.12 Index]