roh.phase {gwid}

runs of homozygosity

Description

runs of homozygosity

Usage

## S3 method for class 'phase'
roh(
  phase,
  gwas,
  w = 10,
  fun = c("sum", "mean"),
  snp_start,
  snp_end,
  roh_mat = FALSE,
  ...
)

Arguments

phase

An object of class phase. Output of build_phase function

gwas

object of class gwas

w

window size

fun

an aggregate function. either “sum” or “mean”

snp_start

select starting position of snps.

snp_end

select ending position of snps.

roh_mat

return roh as matrix

...

other variables

Value

the output will be a result_snps (data.table) object including 3 columns including, “snp_pos”, “case_control”, and “value”