| data_ex_genind {graph4lg} | R Documentation |
data_ex_genind genetic dataset
Description
Genetic dataset from genetic simulation on CDPOP 200 individuals, 10 populations 20 microsatellite loci (3 digits coding) 100 generations simulated
Usage
data_ex_genind
Format
An object of type 'genind'
Details
The simulation was made with CDPOP during 100 generations. Dispersal was possible between the 10 populations. Its probability depended on the cost distance between populations, calculated on a simulated resistance surface (raster). Mutations were not possible. There were initially 600 alleles in total (many disappeared because of drift). Population stayed constant with a sex-ratio of 1. Generations did not overlap. This simulation includes a part of stochasticity and these data result from only 1 simulation run.
References
Landguth EL, Cushman SA (2010). “CDPOP: a spatially explicit cost distance population genetics program.” Molecular Ecology Resources, 10(1), 156–161.
Examples
data("data_ex_genind")
length(unique(data_ex_genind@pop))