ComputeColumnStatistics {grandR}

Compute statistics for all columns (i.e. samples or cells)

Description

Compute statistics for all columns (i.e. samples or cells)

Usage

ComputeColumnStatistics(data, verbose = TRUE)

Arguments

data

a grandR object

verbose

output status messages

Value

a new grandR object containing additional columns in the Coldata table:

• p.conv.X: the T-to-C mismatch frequency in the given ("X") subread category

• percent.new: new overall percentage of new RNA

• total.reads: the total number of reads (or UMIs, if UMIs were sequences)

• total.genes: the total number of genes detected

• percentage per type: the percentage (up to 100!) of the counts of each type in the GeneInfo