getReactome {geneset}

Get Reactome geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description

Description

Get Reactome geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description

Usage

getReactome(org = "human", download.method = NULL, data_dir = NULL)

Arguments

org

Organism name from 'reactome_org'.

download.method

"auto" (as default if NULL), "wininet" (for windows)

data_dir

data saving location, default is the package data directory

Value

A list including geneset and geneset name.

Examples

x = getReactome(org = "human", data_dir = tempdir())