getKEGG {geneset} | R Documentation |
Get KEGG geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
Description
Get KEGG geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
Usage
getKEGG(
org = "hsa",
category = c("pathway", "module", "enzyme", "disease", "drug", "network"),
download.method = NULL,
data_dir = NULL
)
Arguments
org |
Organism name from 'kegg_org'. |
category |
Choose one category from "pathway","module", "enzyme", 'disease' (human only),'drug' (human only) or 'network' (human only) |
download.method |
"auto" (as default if NULL), "wininet" (for windows) |
data_dir |
data saving location, default is the package data directory |
Value
A list including geneset and geneset name.
Examples
x = getKEGG(org = "hsa",category = "pathway", data_dir = tempdir())
[Package geneset version 0.2.7 Index]