getGO {geneset}

Get GO geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description

Description

Get GO geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description

Usage

getGO(
  org = "human",
  ont = c("bp", "cc", "mf"),
  download.method = NULL,
  data_dir = NULL
)

Arguments

org

Organism name from 'go_org'.

ont

One of "bp","cc" or "mf" ontology.

download.method

"auto" (as default if NULL), "wininet" (for windows)

data_dir

data saving location, default is the package data directory

Value

A list including geneset and geneset name.

Examples

x = getGO(org = "human",ont = "mf", data_dir = tempdir())