getEnrichrdb {geneset}

Get EnrichrDB geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id

Description

Get EnrichrDB geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id

Usage

getEnrichrdb(
  org = c("human", "fly", "yeast", "worm", "zebrafish"),
  library = NULL,
  download.method = NULL,
  data_dir = NULL
)

Arguments

org

Organism from 'human','fly','yeast','worm','zebrafish'.

library

Choose one library name from 'enrichr_metadata'.

download.method

"auto" (as default if NULL), "wininet" (for windows)

data_dir

data saving location, default is the package data directory

Value

A list including geneset and geneset name.

Examples

x = getEnrichrdb(org = "human", library = "COVID-19_Related_Gene_Sets",
data_dir = tempdir())