extract_proteins {geneHummus}

Get the protein identifiers

Description

Extract the protein identifier for the given taxonomic species, which are hosted by the RefSeq database (NCBI).

Usage

extract_proteins(targets, taxonIds)

Arguments

targets

A string with the electronic links for the SPARCLE architecture.

taxonIds

A string with the taxonomic species identifiers; legume species (by default).

Details

First, get the protein ids from RefSeq database. Then, extract only the ids for the selected taxonomic species (by default, legume species).

Author(s)

Jose V. Die