accessions_by_spp {geneHummus}

Compute the total number of accession proteins per species

Description

Summarizes a dataframe of protein ids and return the total number of accessions per organism.

Usage

accessions_by_spp(my_accessions)

Arguments

my_accessions

A data frame with accession protein ids and organisms

Value

A data.frame of summarized results including columns:

• organism, taxonomic species

• N.seqs, total number of sequences

Author(s)

Jose V. Die

See Also

getAccessions to create the data frame with acession id and organism for each protein identifier.

Examples

my_prots = data.frame(accession = c("XP_014620925", "XP_003546066", 
   "XP_025640041", "XP_019453956", "XP_006584791", "XP_020212415", 
   "XP_017436622", "XP_004503803", "XP_019463844"),
   organism =  c("Glycine max", "Glycine max", "Arachis hypogaea",
   "Lupinus angustifolius", "Glycine max", "Cajanus cajan", 
   "Vigna angularis", "Cicer arietinum", "Lupinus angustifolius"))
   
accessions_by_spp(my_prots)